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Table 1 Summary of genome assembly results and evaluations

From: Whole-genome de novo sequencing reveals genomic variants associated with differences of sex development in SRY negative pigs

 

NF

D1

D2

Assembly statistics

   

Clean data (Gb)

174

177

166

contig N50 (bp)

92,341

82,287

93,360

scaffold N50 (bp)

5,462,448

7,828,145

7,398,794

Scaffold (Gb)

2.46 Gb

2.47 Gb

2.46 Gb

Contig number

71,561

83,579

71,417

Scaffold number

26,640

32,805

26,986

BUSCOs evaluation

   

Complete Single-Copy BUSCOs (%)

92

90

91

Complete Duplicated BUSCOs (%)

3.00

2.60

2.40

Fragmented BUSCOs (%)

3.00

4.30

3.20

Missing BUSCOs (%)

4.50

4.80

4.80

Total BUSCO groups

843

843

843