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Table 3 Genotype and SNP variant distribution of IFITM1 and NOBOX obtained by Sanger sequencing

From: Whole-genome de novo sequencing reveals genomic variants associated with differences of sex development in SRY negative pigs

Genes

Site

XX DSD pigs (n = 32)

Normal female pigs (n = 32)

  

Genotype frequencies

Allele frequencies

Genotype frequencies

Allele frequencies

IFITM1

c.218 T > C

TT = 0.875

T = 0.938

TT = 0

T = 0

  

TC = 0.125

C = 0.062

TC = 0

C = 1

  

CC = 0

 

CC = 1

 

NOBOX

c.1043 C > G

CC = 0.813

C = 0.906

CC = 0

C = 0

  

CG = 0.187

G = 0.094

CG = 0

G = 1

  

GG = 0

 

GG = 1